This list brought to you with the assistance of Kate, awk and the power of regular expressions:
NES
Donkey Kong(10m)
Donkey Kong Jr.(11m)
Super Mario Bros.(39m)
Super Mario 3 (Full Walkthrough)(2h58m)
Super Mario Bros 3 (with warps)(21m)

The Legend of Zelda
First Quest(1h28m)
Second Quest(2h2m)

Zelda II(2h13m)
Kirby's Adventure(2h2m)
Metroid(1h32m)
Kid Icarus(1h27m)
Punch-Out!! NES(47m)
StarTropics(2h8m)
Tetris (Strategy Guide)(23m)
Yoshi's Cookie (Strategy Guide)(18m)
Dr. Mario (Strategy Guide)(20m)
Yoshi(14m)
Baseball(26m)
Tennis(29m)
Golf(14m)
Pro Wrestling(34m)
Ice Hockey(14m)
Volleyball(23m)
Excitebike(12m)
Pinball(26m)
RC Pro-Am(28m)
Rad Racer(31m)
Ghosts 'n Goblins(39m)
Mega Man(43m)
Mega Man II(1h2m)
Mega Man III(1h4m)
Mega Man IV(1h10m)
Ducktales(30m)
Duck Tales 2(34m)
Darkwing Duck(43m)
Chip 'n' Dale Rescue Rangers 2(44m)
Legendary Wings(38m)
Faxanadu(1h36m)
Legacy of the Wizard (Dragon Slayer IV NES)(1h16m)
Dragon Warrior (Dragon Quest NES)(1h51m)
Final Fantasy(4h)
Crystalis(2h2m)
Double Dragon(24m)
Double Dragon II(23m)
Double Dragon III(29m)
River City Ransom(47m)
Gradius(21m)
Castlevania(26m)
Castlevania II(1h3m)
Castlevania III(1h39m)
Contra(21m)
Super C(26m)
Teenage Mutant Ninja Turtles NES(47m)
Teenage Mutant Ninja Turtles II: The Arcade Game( 1h4m)
Teenage Mutant Ninja Turtles III(1h3m)
Metal Gear(1h29m)
Track and Field (all World Records)(15m)
The Goonies II(43m)
Top Gun(38m)
Tiny Toon Adventures(30m)
The Adventures of Bayou Billy(42m)
Blades of Steel(25m)
Sid Meier's Pirates! NES(1h22m)
Shadowgate(42m)
Deja Vu(47m)
Uninvited(35m)
Ninja Gaiden II(52m)
Ninja Gaiden III(51m)
The Battle of Olympus(1h9m)
Adventures of Lolo(42m)
Adventures of Lolo 2(47m)
Batman NES(30m)
Batman: Return of the Joker(25m)
Blaster Master(1h45m)
The Guardian Legend(1h54m)
A Boy and His Blob(21m)
Adventure Island(1h7m)
Bubble Bobble NES(1h2m)
Rygar(43m)
Maniac Mansion NES(1h1m)
Low-G-Man(41m)
Robocop NES(25m)
Battletoads(57m)
8 Eyes(49m)
Paperboy(18m)
Jackie Chan's Action Kung Fu(37m)
Gremlins 2(25m)
Shatterhand(54m)
Beetlejuice(31m)
Friday the 13th(24m)
Dr. Jekyll and Mr. Hyde(56m)
Rockin' Kats(50m)
Magician(1h19m)
Vice: Project Doom(43m)
The Three Stooges(26m)
Super Dodge Ball(21m)
King's Quest V(1h10m)
Kick Master(39m)
Puss 'n Boots(15m)
Home Alone 2(25m)
Burgertime (Strategy Guide)(11m)
Dr. Chaos(1h7m)
Werewolf: The Last Warrior(1h39m)
Star Trek: 25th Anniversary(1h15m)
Bart vs The Space Mutants(48m)
Bugs Bunny Birthday Blowout(50m)
Bad Dudes(24m)
The Flintstones(36m)
Total Recall(25m)
Robin Hood: Prince of Thieves(1h7m)
Ghostbusters(24m)
Back to the Future(23m)
Who Framed Roger Rabbit?(56m)
A Nightmare on Elm Street(42m)
Jaws(22m)
M.U.S.C.L.E.(15m)
Ninja Kid(19m)
The Legend of Dino Riki(24m)
Narc(25m)

GENESIS/MEGA DRIVE
Home Alone(56m)

SNES
Super Mario World
Part 1(44m)
Part 2(41m)
Part 3(45m)
Part 4(52m)
Ghoul School(34m)
Illusion of Gaia(7h4m)
Super Metroid(2h46m)

Super Mario RPG
Part 1(3h2m)
Part 2(3h2m)
Part 3(2h42m)
Part 4(2h41m)

Secret of Mana
Part 1(2h29m)
Part 2(1h59m)
Part 3(1h59m)
Part 4(1h48m)

The Legend of Zelda: A Link to the Past(3h57m)
Super Punch-Out!! SNES(34m)
Mega Man X(1h25m)
Mega Man X2(1h29m)
Final Fight(43m)
Sunset Riders(34m)

NINTENDO 64
Star Fox 64
Easy Route(47m)
Medium Route(43m)
Hard Route(51m)

Super Mario 64
Part 1(1h13m)
Part 2(59m)
Part 3(1h7m)
Part 4(51m)

Goldeneye 007(1h52m)

MISCELLANEOUS
Oregon Trail(26m)
Quest for Glory(1h4m)
Myst(1h29m)
Alley Cat(17m)

I'd like to dedicate this post to the memory of Servo5678.